IDDecoyProbability

Util to estimate probability of peptide hits

pot. predecessor tools	$\longrightarrow$ IDDecoyProbability $\longrightarrow$	pot. successor tools
MascotAdapter (or other ID engines)		-
PeptideIndexer

Experimental classes:: This util is deprecated and might behave not as expected!

So far an estimation of the false score distribution with a gamma distribution and the correct score distribution with a gaussian distribution is performed. The probabilities are calculated using bayes law, similar to PeptideProphet. This implementation is much simpler than that of PeptideProphet.

Note

For mzid in-/out- put, due to legacy reason issues you are temporarily asked to use IDFileConverter as a wrapper. The command line parameters of this tool are:

INI file documentation of this tool:

For the parameters of the algorithm section see the algorithms documentation:
decoy_algorithm