EBImage {EBImage} | R Documentation |
EBImage
is an image processing and analysis package for R. Its primary
goal is to enable automated analysis of large sets of images such as those
obtained in high throughput automated microscopy.
The package uses the ImageMagick
library for image I/O operations and
some image processing methods. The GTK
library is used for displaying images
using display
.
EBImage
relies on the Image
object to store and process images
but also works on multi-dimensional arrays.
Image methods
Image
as.Image
, is.Image
, as.raster.Image
colorMode
, imageData
getFrame
, getNumberOfFrames
Image I/O, display
readImage
, writeImage
display
, animate
image
Spatial transform
resize
, flip
, flop
rotate
, translate
, affine
Image segmentation, objects manipulation
thresh
, bwlabel
watershed
, propagate
ocontour
paintObjects
, rmObjects
, reenumerate
Image enhancement, filtering
normalize
filter2
, blur
, gblur
equalize
Morphological operations
makeBrush
erode
, dilate
, opening
, closing
distmap
floodFill
, fillHull
Colorspace manipulation
rgbImage
, channel
Image stacking, combining, tiling
stackObjects
combine
tile
, untile
Drawing on images
drawfont
, drawtext
, drawCircle
Features extraction
computeFeatures
computeFeatures.basic
, computeFeatures.moment
, computeFeatures.shape
, computeFeatures.haralick
standardExpandRef
Obsolete
getFeatures
hullFeatures
edgeProfile
, edgeFeatures
moments
, cmoments
, smoments
, rmoments
haralickFeatures
, haralickMatrix
zernikeMoments
Oleg Sklyar, osklyar@ebi.ac.uk, Copyright 2005-2007
Gregoire Pau, gpau@ebi.ac.uk
Wolfgang Huber, huber@ebi.ac.uk
Mike Smith, msmith@ebi.ac.uk
European Bioinformatics Institute European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD UKThe code of
propagate
is based on the CellProfiler
with permission granted to distribute this particular part under LGPL, the
corresponding copyright (Jones, Carpenter) applies.
The source code is released under LGPL
(see the LICENSE
file in the package root for the complete license wording). ImageMagick
and GTK
used from the package are distributed separately by the
respective copyright holders.
This library is free software; you can redistribute it and/or modify it
under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2.1 of the
License, or (at your option) any later version. This library is distributed
in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
See the GNU Lesser General Public License for more details. For LGPL license
wording see http://www.gnu.org/licenses/lgpl.html
example(readImage) example(display) example(rotate) example(propagate)